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Synthesis and Evaluation of an RNA Editing Substrate Bearing 2′-Deoxy-2′-Mercaptoadenosine Prasanna Jayalath , Subhash Pokharel , Eduardo Véliz , Peter A. Beal Nucleosides, Nucleotides and Nucleic Acids  Vol. 28, Iss. 2, 2009

Krishnamurthy, M., et al. (2008). “Screening helix-threading peptides for RNA binding using a thiazole orange displacement assay.” Bioorganic & Medicinal Chemistry 16(19): 8914-8921.

Maydanovych, O., et al. (2007). Chapter 17 – Probing Adenosine-to-Inosine Editing Reactions Using RNA-Containing Nucleoside Analogs. Methods Enzymol. M. G. Jonatha, Academic Press. Volume 424: 369-386.

Krishnamurthy, M., et al. (2007). “Macrocyclic Helix-Threading Peptides for Targeting RNA.” Angewandte Chemie International Edition 46(37): 7044-7047.

Pokharel, S. and P. A. Beal (2006). “High-Throughput Screening for Functional Adenosine to Inosine RNA Editing Systems.” ACS Chemical Biology 1(12): 761-765.

Puthenveetil, S., et al. (2006). “Controlling activation of the RNA-dependent protein kinase by siRNAs using site-specific chemical modification.” Nucleic Acids Research 34(17): 4900-4911.

Maydanovych, O. and P. A. Beal (2006). “C6-Substituted Analogues of 8-Azanebularine:  Probes of an RNA-Editing Enzyme Active Site.” Organic Letters 8(17): 3753-3756.

Maydanovych, O. and P. A. Beal (2006). “Breaking the Central Dogma by RNA Editing.” Chemical Reviews 106(8): 3397-3411.

Véliz, E. A. and P. A. Beal (2006). “Mitsunobu reactions of nucleoside analogs using triisopropyl phosphite–DIAD.” Tetrahedron Letters 47(18): 3153-3156.

Krishnamurthy, M., et al. (2006). “RNA binding and thiolytic stability of a quinoline-containing helix-threading peptide.” Organic & Biomolecular Chemistry 4(4): 639-645.

Gooch, B. D., et al. (2005). “Binding of Helix-Threading Peptides to E. coli 16S Ribosomal RNA and Inhibition of the S15–16S Complex.” ChemBioChem 6(12): 2247-2254.

Gooch, B. D. and P. A. Beal (2005). “Recognition of Duplex RNA by Helix-Threading Peptides [J. Am. Chem. Soc. 2004, 126, 10603−10610].” Journal of the American Chemical Society 127(15): 5727-5727.

Beal, P. A. (2005). “Duplex RNA-Binding Enzymes: Headliners from Neurobiology, Virology, and Development.” ChemBioChem 6(2): 257-266.

Malina, A., et al. (2005). “Inhibitory properties of nucleic acid-binding ligands on protein synthesis.” FEBS Letters 579(1): 79-89.

Stephens, O. M., et al. (2004). “The Binding Selectivity of ADAR2’s dsRBMs Contributes to RNA-Editing Selectivity.” Chemistry & Biology 11(9): 1239-1250.

Haudenschild, B. L., et al. (2004). “A Transition State Analogue for an RNA-Editing Reaction.” Journal of the American Chemical Society 126(36): 11213-11219.

Gooch, B. D. and P. A. Beal (2004). “Recognition of Duplex RNA by Helix-Threading Peptides.” Journal of the American Chemical Society 126(34): 10603-10610.

Puthenveetil, S., et al. (2004). “Site-Specific Modification of Epstein–Barr Virus-Encoded RNA 1 with N2-Benzylguanosine Limits the Binding Sites Occupied by PKR.” ChemBioChem 5(3): 383-386.

Krishnamurthy, M., et al. (2004). “Peptide Quinoline Conjugates:  A New Class of RNA-Binding Molecules.” Organic Letters 6(1): 63-66.

Carlson, C. B., et al. (2003). “Recognition of double-stranded RNA by proteins and small molecules.” Biopolymers 70(1): 86-102.

Véliz, E. A., et al. (2003). “Substrate Analogues for an RNA-Editing Adenosine Deaminase:  Mechanistic Investigation and Inhibitor Design.” Journal of the American Chemical Society 125(36): 10867-10876.

Carlson, C. B., et al. (2003). “Preferred RNA Binding Sites for a Threading Intercalator Revealed by In Vitro Evolution.” Chemistry & Biology 10(7): 663-672.

Jammi, N. V., et al. (2003). “Small molecule inhibitors of the RNA-dependent protein kinase.” Biochemical and Biophysical Research Communications 308(1): 50-57.

Carlson, C. B., et al. (2002). “Selection of Small-Molecule Mediators of the RNA Regulation of PKR, the RNA-Dependent Protein Kinase.” ChemBioChem 3(9): 859-865.

Vuyisich, M. and P. A. Beal (2002). “Controlling Protein Activity with Ligand-Regulated RNA Aptamers.” Chemistry & Biology 9(8): 907-913.

Vuyisich, M., et al. (2002). “The binding site of the RNA-dependent protein kinase (PKR) on EBER1 RNA from Epstein–Barr virus.” EMBO reports 3(7): 622-627.

Carlson, C. B. and P. A. Beal (2002). “Point of Attachment and Sequence of Immobilized Peptide-Acridine Conjugates Control Affinity for Nucleic Acids.” Journal of the American Chemical Society 124(29): 8510-8511.

Spanggord, R. J., et al. (2002). “Identification of Binding Sites for Both dsRBMs of PKR on Kinase-Activating and Kinase-Inhibiting RNA Ligands.” Biochemistry 41(14): 4511-4520.

Yi-Brunozzi, H. Y., et al. (2001). “Conformational Changes That Occur during an RNA-editing Adenosine Deamination Reaction.” Journal of Biological Chemistry 276(41): 37827-37833.

Véliz, E. A. and P. A. Beal (2001). “6-Bromopurine Nucleosides as Reagents for Nucleoside Analogue Synthesis.” The Journal of Organic Chemistry 66(25): 8592-8598.

Véliz, E. A., et al. (2001). “Synthesis and Analysis of RNA Containing 6-Trifluoromethylpurine Ribonucleoside.” Organic Letters 3(19): 2969-2972.

V. Jammi, N. and P. A. Beal (2001). “Phosphorylation of the RNA-dependent protein kinase regulates its RNA-binding activity.” Nucleic Acids Research 29(14): 3020-3029.

Spanggord, R. J. and P. A. Beal (2001). “Selective Binding by the RNA Binding Domain of PKR Revealed by Affinity Cleavage.” Biochemistry 40(14): 4272-4280.

Easterwood, L. M., et al. (2000). “Demethylation of 6-O-Methylinosine by an RNA-Editing Adenosine Deaminase.” Journal of the American Chemical Society 122(46): 11537-11538.

Stephens, O. M., et al. (2000). “Analysis of the RNA-Editing Reaction of ADAR2 with Structural and Fluorescent Analogues of the GluR-B R/G Editing Site†.” Biochemistry 39(40): 12243-12251.

Vuyisich, M. and P. A. Beal (2000). “Regulation of the RNA-dependent protein kinase by triple helix formation.” Nucleic Acids Research 28(12): 2369-2374.

Spanggord, R. J. and P. A. Beal (2000). “Site-specific modification and RNA crosslinking of the RNA-binding domain of PKR.” Nucleic Acids Research 28(9): 1899-1905.

Carlson, C. B. and P. A. Beal (2000). “Solid-Phase Synthesis of Acridine−Peptide Conjugates and Their Analysis by Tandem Mass Spectrometry.” Organic Letters 2(10): 1465-1468.

Véliz, E. A. and P. A. Beal (2000). “C6 substitution of inosine using hexamethylphosphorous triamide in conjunction with carbon tetrahalide or N-halosuccinimide.” Tetrahedron Letters 41(11): 1695-1697.

Yi-Brunozzi, H. Y., et al. (1999). “Synthetic substrate analogs for the RNA-editing adenosine deaminase ADAR-2.” Nucleic Acids Research 27(14): 2912-2917.